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1## Runtime Configuration (Step 0 — before any processing)
2 
3Read these files to configure domain-specific behavior:
4 
51. **`ops/derivation-manifest.md`** — vocabulary mapping, folder names, platform hints
6   - Use `vocabulary.notes` for the notes folder name
7   - Use `vocabulary.inbox` for the inbox folder name
8   - Use `vocabulary.note` for the note type name in output
9   - Use `vocabulary.topic_map` for MOC/topic map references
10   - Use `vocabulary.topic_maps` for plural form
11 
122. **`ops/config.yaml`** — processing depth, thresholds
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143. **Three-space reference** — `${CLAUDE_PLUGIN_ROOT}/reference/three-spaces.md` for boundary rules (load only for full and three-space modes)
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164. **Templates** — read template files to understand required schema fields for validation
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18If these files don't exist (pre-init invocation or standalone use), use universal defaults:
19- notes folder: `notes/`
20- inbox folder: `inbox/`
21- topic map: topic maps in notes/
22 
23---
24 
25## EXECUTE NOW
26 
27**Target: $ARGUMENTS**
28 
29Parse the invocation mode immediately:
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31| Input | Mode | Categories Run |
32|-------|------|---------------|
33| empty or `quick` | Quick | 1 (Schema), 2 (Orphans), 3 (Links) |
34| `full` | Full | All 8 categories |
35| `three-space` | Three-Space | 5 (Three-Space Boundaries) only |
36 
37**Execute these steps:**
38 
391. **Detect mode** from arguments
402. **Scan the vault** — inventory all note files, {vocabulary.topic_map} files, inbox items, ops files
413. **Run each applicable diagnostic category** in order (1-8)
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