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SKILL.md

benchling-integration

Agent skill fromK-Dense-AI/scientific-agent-skills

Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.

How to install benchling-integration

install benchling-integration
# install the scientific-agent-skills pack with the skills CLI
npx skills add K-Dense-AI/scientific-agent-skills

# or add only this skill to Claude Code: copy the folder

skills/benchling-integration/

# into

~/.claude/skills/benchling-integration/ (all projects)

.claude/skills/benchling-integration/ (one project)

skills/benchling-integration/SKILL.md

MITFull file
1# Benchling Integration
2
3## When to use
4
5Use this skill for Benchling registry entities, sequence imports, inventory, ELN entries,
6workflow tasks, apps, event-driven integrations, and warehouse analytics.
7
8**Reviewed 2026-09-30:** examples target the released **benchling-sdk 1.25.0** and its
9stable **v2** API models. The [current authentication guide](https://docs.benchling.com/docs/authentication)
10recommends V3 for new development, while the [V3 guide](https://docs.benchling.com/docs/v3-api-overview)
11still describes endpoint-specific early access. Confirm your tenant's V3 availability and
12stability before migrating; these v2 SDK examples must not be mechanically rewritten to V3.
13
14SDK imports, model serialization, and request construction were checked locally against
151.25.0. Tenant-dependent examples are **illustrative**: no authenticated requests,
16mutations, AWS deployment, or warehouse connection were run.
17
18## Workflow
19
201. Identify the tenant, API version, identity, and permissions. Use OAuth app credentials
21 for background integrations; use delegated authorization when acting as an individual
22 user. See [authentication](references/authentication.md).
232. Read the relevant schema and resolve actual folder, registry, status, and dropdown IDs.
24 Preserve sequence alphabet/topology and sample units. A valid Python model does not
25 establish biological correctness or satisfaction of a tenant's required fields.
26…

Excerpt shown under the repository's MIT license.

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