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SKILL.md

bids

Agent skill fromK-Dense-AI/scientific-agent-skills

Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.

How to install bids

install bids
# install the scientific-agent-skills pack with the skills CLI
npx skills add K-Dense-AI/scientific-agent-skills

# or add only this skill to Claude Code: copy the folder

skills/bids/

# into

~/.claude/skills/bids/ (all projects)

.claude/skills/bids/ (one project)

skills/bids/SKILL.md

MITFull file
1# Brain Imaging Data Structure (BIDS)
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3## Overview
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5The Brain Imaging Data Structure (BIDS) is a community standard for organizing and describing neuroscience and biomedical research datasets. It defines a consistent file naming convention, directory hierarchy, and metadata schema so that datasets are immediately understandable by humans and software tools alike. BIDS is governed by the BIDS Specification (reviewed against v1.11.2, released 2026-09-29) and is maintained by the community via the BIDS-Standard GitHub organization.
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7While BIDS originated for MRI, it has grown well beyond neuroimaging. The specification now covers 11 modalities spanning imaging, electrophysiology, and behavioral data:
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9- **Imaging**: MRI (structural, functional, diffusion, fieldmaps, perfusion/ASL), PET, microscopy
10- **Electrophysiology**: EEG, MEG, iEEG (intracranial EEG), EMG
11- **Other**: NIRS (near-infrared spectroscopy), motion capture, behavioral data (without imaging), MR spectroscopy
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13Active BEPs are extending BIDS further — notably BEP032 (microelectrode electrophysiology) proposes support for extracellular recordings including Neuropixels probes, bringing BIDS to a prevalent methodology in animal neuroscience research (see also the neuropixels-analysis skill).
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15Repository submission requirements vary by modality and archive; check the target archive before preparing a deposit.
16…

Excerpt shown under the repository's MIT license.

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