Skills for Real Engineers. Straight from my .agents directory.
depmap
Agent skill fromK-Dense-AI/scientific-agent-skills
Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics biomarkers, and PRISM drug sensitivity. Supports cancer-selective dependency, co-essentiality, and candidate synthetic-lethality analyses with release-aware identifiers and statistical checks.
How to install depmap
npx skills add K-Dense-AI/scientific-agent-skills# or add only this skill to Claude Code: copy the folder
skills/depmap/
# into
~/.claude/skills/depmap/ (all projects)
.claude/skills/depmap/ (one project)
1# DepMap — Cancer Dependency Map23## When to use45Use this skill to rank dependencies in cancer models, compare prespecified biomarker6cohorts, inspect co-essentiality, or relate genetic dependencies to PRISM compound7response. These analyses generate target and synthetic-lethality hypotheses; they8do not establish clinical efficacy, a therapeutic window, or a causal interaction.910DepMap integrates Broad and Sanger CRISPR screens and hosts independent RNAi and11drug-screen datasets. Match each question to its assay and pinned release. RNAi12DEMETER2 is a different perturbation modality, not an older CRISPR scoring method.1314## 1. Discover a release, then obtain its files1516Use [DepMap Downloads](https://depmap.org/portal/data_page/) and the selected17release's README and release notes. On review, the live catalogue's latest18`DepMap Public` release was **26Q1**, dated 2026-04-01. Rediscover before new work;19a release name or expected quarter is not evidence a release is available.2021### Verified public endpoint2223`GET https://depmap.org/portal/api/no-captcha/download/files` returns a complete24CSV catalogue, with no request body, API key, or pagination parameters. Required25metadata columns are `release`, `release_date`, `filename`, and `md5_hash`.26The live response also has `url`: **older files can have links, while recent27release rows have blank links**. All 85 entries for 26Q1 had blank `url` values at28review. Treat availability per row, not per endpoint.29…
Excerpt shown under the repository's MIT license.
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