Tooluck logoTooluck
SKILL.md

depmap

Agent skill fromK-Dense-AI/scientific-agent-skills

Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics biomarkers, and PRISM drug sensitivity. Supports cancer-selective dependency, co-essentiality, and candidate synthetic-lethality analyses with release-aware identifiers and statistical checks.

How to install depmap

install depmap
# install the scientific-agent-skills pack with the skills CLI
npx skills add K-Dense-AI/scientific-agent-skills

# or add only this skill to Claude Code: copy the folder

skills/depmap/

# into

~/.claude/skills/depmap/ (all projects)

.claude/skills/depmap/ (one project)

skills/depmap/SKILL.md

MITFull file
1# DepMap — Cancer Dependency Map
2
3## When to use
4
5Use this skill to rank dependencies in cancer models, compare prespecified biomarker
6cohorts, inspect co-essentiality, or relate genetic dependencies to PRISM compound
7response. These analyses generate target and synthetic-lethality hypotheses; they
8do not establish clinical efficacy, a therapeutic window, or a causal interaction.
9
10DepMap integrates Broad and Sanger CRISPR screens and hosts independent RNAi and
11drug-screen datasets. Match each question to its assay and pinned release. RNAi
12DEMETER2 is a different perturbation modality, not an older CRISPR scoring method.
13
14## 1. Discover a release, then obtain its files
15
16Use [DepMap Downloads](https://depmap.org/portal/data_page/) and the selected
17release's README and release notes. On review, the live catalogue's latest
18`DepMap Public` release was **26Q1**, dated 2026-04-01. Rediscover before new work;
19a release name or expected quarter is not evidence a release is available.
20
21### Verified public endpoint
22
23`GET https://depmap.org/portal/api/no-captcha/download/files` returns a complete
24CSV catalogue, with no request body, API key, or pagination parameters. Required
25metadata columns are `release`, `release_date`, `filename`, and `md5_hash`.
26The live response also has `url`: **older files can have links, while recent
27release rows have blank links**. All 85 entries for 26Q1 had blank `url` values at
28review. Treat availability per row, not per endpoint.
29…

Excerpt shown under the repository's MIT license.

More skills in scientific-agent-skills

Keep exploring

Similar skill repositories

thedotmack /

claude-mem
116k

Persistent Context Across Sessions for Every Agent – Captures everything your agent does during sessions, compresses it with AI, and injects relevant context back into future sessions. Works with Claude Code, OpenClaw, Codex, Gemini, Hermes, Copilot, OpenCode + More

CCCXGHGM+135 skills

nexu-io /

open-design
107k

The 1st Collaborative AI Design Agent Workspace. Local-first and open source. Create motion, prototypes, websites, apps, dashboards, presentations, images, and videos with your team and AI agents. Share work, exchange feedback, and iterate together in one workspace.

40 skills

tt-a1i /

archify
95k

Turn any idea, plan, or codebase into a beautiful interactive diagram. An agent skill for Claude Code, Codex, and more.

CCCXOC1 skill

Newsletter

Join the Community

Subscribe to our newsletter for the latest news and updates